| Protein ZmbHLH48 | |
|---|---|
|
ZmbHLH48 is a protein in the bHLH family.
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| Information | |
| TF Name: | ZmbHLH48 |
| Species: | Maize |
| TF Family: | bHLH |
| Gene Name(Synonym): | BHLH48 |
| Uniprot ID: | B6U0E9 |
| Subgenome: | 1 |
Protein ZmbHLH48
ZmbHLH48 is a protein in the bHLH family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00010 | |
| Zm00001eb062130_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d034596 | DAPseq |  |
sequence | fimo | position |
| Zm00001d034596 | DAPseq |  |
sequence | fimo | position |
| Zm00001d034596 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d034596 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmbHLH48 is the regulator
Interactions where ZmbHLH48 is the target
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Zm00001eb062130_T001 from maize genome v5
Amino Acid Sequence
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MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERI
KSHLDRLRNVLACDPKIDKASLLAKAVERVRDLKQRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLL
PDLIETLRALRLRTLRSEMATLGGRVRNVLVLARDVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVE
RPGAAGDRPKRRRVSDMNMQAAA
MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERI
KSHLDRLRNVLACDPKIDKASLLAKAVERVRDLKQRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLL
PDLIETLRALRLRTLRSEMATLGGRVRNVLVLARDVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVE
RPGAAGDRPKRRRVSDMNMQAAA
MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERI
KSHLDRLRNVLACDPKIDKASLLAKAVERVRDLKQRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLL
PDLIETLRALRLRTLRSEMATLGGRVRNVLVLARDVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVE
RPGAAGDRPKRRRVSDMNMQAAA
MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERI
KSHLDRLRNVLACDPKIDKASLLAKAVERVRDLKQRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLL
PDLIETLRALRLRTLRSEMATLGGRVRNVLVLARDVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVE
RPGAAGDRPKRRRVSDMNMQAAA
MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERI
KSHLDRLRNVLACDPKIDKASLLAKAVERVRDLKQRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLL
PDLIETLRALRLRTLRSEMATLGGRVRNVLVLARDVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVE
RPGAAGDRPKRRRVSDMNMQAAA
MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERI
KSHLDRLRNVLACDPKIDKASLLAKAVERVRDLKQRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLL
PDLIETLRALRLRTLRSEMATLGGRVRNVLVLARDVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVE
RPGAAGDRPKRRRVSDMNMQAAA
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00010 |
|
| PF00010 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CACATGCCATCAGCATGACCCTTGT...
CACATGCCATCAGCATGACCCTTGTTTACATCAAGCAATAGTTACCCATCAAAAGGTGATGTGCAACCCAAGGCACGCACGCAGAAGAGATATGGAGTGAACGCCCCCGAAGTTGCAACGGGAGTCAACAAGGAAGCAGTCCCGATCGGTCCAGCACCGCCACCACCGCATCTCCCCCGACGGCGACCCCGCACCAGGTCGGCACCACCATCGCGACCGTCCGCCGCTGCCACGGACGGCTAGCTGCGACGAGCATCCCTGTCTCGCAGGACTCGTCTTCTCTCTCTCCGCTCCCGCGTGACGGGTCAACACGTAAGCGCGCGGGCCACCACTAGCCTACCAACAACAAATGGCTCCCTTTCTCTCTCTGGAACACTCAGCCTCACTCTCTGCCTCTCTCTTCACTGGATGGATGGAGATGGAGCACTCACTTTCTCTCTCTTCGCCTTTGCTTATTTATTCCTTCTCCCAGCCCATCCATCCATCGCATCCCATCTCTCCTCACTGTCCGTGTCGCTCTCTCTCTCCCCATCCATCAAATCCGCTTCGTCATCTCGCTTGCAGTCCAACCAAGTCCTAGGAATAACACCACGGCGCAACAACTCGCACCACCACCGCCGCGCAGTAGCTAGCTACCATACCAGCTGCACGCCTCAGTGCTAGCTTCGCCGGGCGGGGGCGGCTGGGACACCAGCAGTGCGTGCTGCGCTGCGCTGCGCCTCTCCCTGCCACTCACTCGAGGAGCAACCGTCCCAGCTGCAAGGGCGACAAGAGGATCGACCAGCTGCTAGTAGCTAGCTCGCACATGTTCCCGGTCGAAGTGTCGGCGCTCGCGGCGGGCGGTGCGGGAGCGGGGCGTCAGGCTGCCGGCGACGCCGCCGGGACGATGCTGCCGCCCTTTTTCATGGGCTCCATCTGGCCCGCGACCGCTGGCGCCGCTGGCTCCGAGGAGGACGAGGCGGCGGCCGCCGCCGCCGCCCACGACCGCGCGCTCGCCGCGTCGCGCAACCACCGCGAGGCCGAGAAGCGCCGTCGCGAGCGCATCAAGTCGCACCTCGACCGCCTCCGCAACGTCCTCGCCTGCGACCCCAAGATAGACAAGGCTTCGCTGCTGGCGAAGGCGGTGGAGAGGGTGCGGGACCTGAAGCAGCGGGCGGCGGGCGTCGGGGAGGCAGCGCCGGCGCACCTGTTCCCGACGGAGCACGACGAGATCGTTGTGCTCGCGTCGGGCAGCGGCGCCGTCTTCGAGGCCTCCGTCTGCTGCGACGACCGCTCCGACCTCCTCCCGGACCTCATCGAGACGCTGCGCGCGCTCCGCCTCCGCACGCTCCGCTCCGAGATGGCCACCCTCGGCGGCCGCGTCCGCAACGTGCTCGTCCTGGCGCGCGACGTCGTCGACGGCGGCGGCGGTGCCGTCGCGGGAGGTGATGACGGATACGGTGGACGCGCTGCTGACTCGGCGGGCGGCGCCACGGACGGCGGCGGCGGCGACTTCCTCAAGGAAGCCCTGCGGGCTCTGGTAGAGAGGCCAGGCGCCGCCGGAGACCGGCCCAAGAGGCGACGGGTCTCGGACATGAACATGCAAGCGGCAGCATAGCTAGCACGCCGCCGCAGGAGGCGGGCAGATCATCTCGCTCGATTGGTCGTCGTAGCTCAAATACCTAATTGCATGCATGCTCATGTCGAATATATAAAAATGGTACTACCTCCATCATCTCCATGTTTAGTTAGATGTCTTCATGATGCTAGCTAGATGTCTTCATCTCCCATTCTCATGCATGGCTTTCTTCTTGAGATGCCATACCATTATTAGGGATAGTATGGTATTGCTATTAGGGTTTGCTTGAGCTTGAACCAAATGTTGTTCCAAAGCCAATGCAAATCTCCCTTTGAGCTATAATAACAAAAAAGAGTCAAGCAAAGGTTGCGGACTTGTTACCCAACTAGTTAATAAGCAATATATATTCTAAGCAATATATATTTGGAT
GRMZM2G027068_T01 from maize genome v3
Amino Acid Sequence
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MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERI
KSHLDRLRNVLACDPKIDKASLLAKAVERVRDLKQRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLL
PDLIETLRALRLRTLRSEMATLGGRVRNVLVLARDVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVE
RPGAAGDRPKRRRVSDMNMQAAA
Nucleotide Sequence
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ACCAAGTCCTAGGAATAACACCACG...
ACCAAGTCCTAGGAATAACACCACGGCGCAACAACTCGCACCACCACCGCCGCGCAGTAGCTAGCTACCATACCAGCTGCACGCCTCAGTGCTAGCTTCGCCGGGCGGGGGCGGCTGGGACACCAGCAGTGCGTGCTGCGCTGCGCTGCGCCTCTCCCTGCCACTCACTCGAGGAGCAACCGTCCCAGCTGCAAGGGCGACAAGAGGATCGACCAGCTGCTAGTAGCTAGCTCGCACATGTTCCCGGTCGAAGTGTCGGCGCTCGCGGCGGGCGGTGCGGGAGCGGGGCGTCAGGCTGCCGGCGACGCCGCCGGGACGATGCTGCCGCCCTTTTTCATGGGCTCCATCTGGCCCGCGACCGCTGGCGCCGCTGGCTCCGAGGAGGACGAGGCGGCGGCCGCCGCCGCCGCCCACGACCGCGCGCTCGCCGCGTCGCGCAACCACCGCGAGGCCGAGAAGCGCCGTCGCGAGCGCATCAAGTCGCACCTCGACCGCCTCCGCAACGTCCTCGCCTGCGACCCCAAGATAGACAAGGCTTCGCTGCTGGCGAAGGCGGTGGAGAGGGTGCGGGACCTGAAGCAGCGGGCGGCGGGCGTCGGGGAGGCAGCGCCGGCGCACCTGTTCCCGACGGAGCACGACGAGATCGTTGTGCTCGCGTCGGGCAGCGGCGCCGTCTTCGAGGCCTCCGTCTGCTGCGACGACCGCTCCGACCTCCTCCCGGACCTCATCGAGACGCTGCGCGCGCTCCGCCTCCGCACGCTCCGCTCCGAGATGGCCACCCTCGGCGGCCGCGTCCGCAACGTGCTCGTCCTGGCGCGCGACGTCGTCGACGGCGGCGGCGGTGCCGTCGCGGGAGGTGATGACGGATACGGTGGACGCGCTGCTGACTCGGCGGGCGGCGCCACGGACGGCGGCGGCGGCGACTTCCTCAAGGAAGCCCTGCGGGCTCTGGTAGAGAGGCCAGGCGCCGCCGGAGACCGGCCCAAGAGGCGACGGGTCTCGGACATGAACATGCAAGCGGCAGCATAGCTAGCACGCCGCCGCAGGAGGCGGGCAGATCATCTCGCTCGATTGGTCGTCGTAGCTCAAATACCTAATTGCATGCATGCTCATGTCGAATATATAAAAATGGTACTACCTCCATCATCTCCATGTTTAGTTAGATGTCTTCATGATGCTAGCTAGATGTCTTCATCTCCCATTCTCATGCATGGCTTTCTTCTTGAGATGCCATACCATTATTAGGGATAGTATGGTATTGCTATTAGGGTTTGCTTGAGCTTGAACCAAATGTTGTTCCAAAGCCAATGCAAATCTCCCTTTGAGCTATAATAACAAAAAAGAGTCAAGCAAAGGTTGCGGACTTGTTACCCAACTAGTTAATAAGCAATATATATTCTAAGCAATATATATTTGGATAA
GRMZM2G027068_T02 from maize genome v3
Amino Acid Sequence
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MFPVEVSALAAGGAGAGRQAAGDAAGTMLPPFFMGSIWPATAGAAGSEEDEAATSSRKPCGLW
Nucleotide Sequence
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ATCCCATCTCTCCTCACTGTCCGTG...
ATCCCATCTCTCCTCACTGTCCGTGTCGCTCTCTCTCTCCCCATCCATCAAATCCGCTTCGTCATCTCGCTTGCAGTCCAACCAAGTCCTAGGAATAACACCACGGCGCAACAACTCGCACCACCACCGCCGCGCAGTAGCTAGCTACCATACCAGCTGCACGCCTCAGTGCTAGCTTCGCCGGGCGGGGGCGGCTGGGACACCAGCAGTGCGTGCTGCGCTGCGCTGCGCCTCTCCCTGCCACTCACTCGAGGAGCAACCGTCCCAGCTGCAAGGGCGACAAGAGGATCGACCAGCTGCTAGTAGCTAGCTCGCACATGTTCCCGGTCGAAGTGTCGGCGCTCGCGGCGGGCGGTGCGGGAGCGGGGCGTCAGGCTGCCGGCGACGCCGCCGGGACGATGCTGCCGCCCTTTTTCATGGGCTCCATCTGGCCCGCGACCGCTGGCGCCGCTGGCTCCGAGGAGGACGAGGCGGCGACTTCCTCAAGGAAGCCCTGCGGGCTCTGGTAGAGAGGCCAGGCGCCGCCGGAGACCGGCCCAAGAGGCGACGGGTCTCGGACATGAACATGCAAGCGGCAGCATAGCTAGCACGCCGCCGCAGGAGGCGGGCAGATCATCTCGCTCGATTGGTCGTCGTAGCTCAAATACCTAATTGCATGCATGCTCATGTCGAATATATAAAAATGGTACTACCTCC
Zm00001d034596_T001 from maize genome v4
Amino Acid Sequence
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MLPPFFMGSIWPATAGAAGSEEDEAAAAAAAHDRALAASRNHREAEKRRRERIKSHLDRLRNIDKASLLAKAVERVRDLK
QRAAGVGEAAPAHLFPTEHDEIVVLASGSGAVFEASVCCDDRSDLLPDLIETLRALRLRTLRSEMATLGGRVRNVLVLAR
DVVDGGGGAVAGGDDGYGGRAADSAGGATDGGGGDFLKEALRALVERPGAAGDRPKRRRVSDMNMQAAA
Nucleotide Sequence
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ATGCTGCCGCCCTTTTTCATGGGCT...
ATGCTGCCGCCCTTTTTCATGGGCTCCATCTGGCCCGCGACCGCTGGCGCCGCTGGCTCCGAGGAGGACGAGGCGGCGGCCGCCGCCGCCGCCCACGACCGCGCGCTCGCCGCGTCGCGCAACCACCGCGAGGCCGAGAAGCGCCGTCGCGAGCGCATCAAGTCGCACCTCGACCGCCTCCGCAACATAGACAAGGCTTCGCTGCTGGCGAAGGCGGTGGAGAGGGTGCGGGACCTGAAGCAGCGGGCGGCGGGCGTCGGGGAGGCAGCGCCGGCGCACCTGTTCCCGACGGAGCACGACGAGATCGTTGTGCTCGCGTCGGGCAGCGGCGCCGTCTTCGAGGCCTCCGTCTGCTGCGACGACCGCTCCGACCTCCTCCCGGACCTCATCGAGACGCTGCGCGCGCTCCGCCTCCGCACGCTCCGCTCCGAGATGGCCACCCTCGGCGGCCGCGTCCGCAACGTGCTCGTCCTGGCGCGCGACGTCGTCGACGGCGGCGGCGGTGCCGTCGCGGGAGGTGATGACGGATACGGTGGACGCGCTGCTGACTCGGCGGGCGGCGCCACGGACGGCGGCGGCGGCGACTTCCTCAAGGAAGCCCTGCGGGCTCTGGTAGAGAGGCCAGGCGCCGCCGGAGACCGGCCCAAGAGGCGACGGGTCTCGGACATGAACATGCAAGCGGCAGCATAG
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